hdfsee image.h5 [options] ... hdfsee --help
hdfsee is a simple image viewer for images stored in HDF5 files.
Most of the options that can be set on the command line can be changed via the user interface once the program is running. The command line options are to help when running hdfsee from a script.
Get the image data to display from path inside the HDF5 file. Example: /data/rawdata.
If no geometry file is provided (see -g) and this option is not used, hdfsee will display the first two-dimensional dataset it finds in the file with both dimensions greater than 64. If a geometry file is provided, the data layout description from the file determines which image is displayed (see man crystfel_geometry).
If -e is used in combination with -g, hdfsee will attempt to show the specified dataset with the geometry applied. The data layout description from the geometry file will be ignored, the data block to be used as data source for all panels will be set to path and it will be assumed to be 2-dimensional.
Calibration mode allows you to visually adjust the locations of panels. To enter calibration mode, select Tools->Calibration Mode from the menu. The currently selected panel will be bordered in white. Press + or - to move to the next or previous panel (as listed in the geometry file). Use the arrow keys to move the current panel. Press 'f' to hide or restore the white border. Press 's' to save the geometry file with your modifications. Press 'g' to toggle between moving individual panels, rigid groups (if any are defined in the geometry file) and moving all panels together. Most of these actions can also be accessed from the Calibration menu, which becomes aptive when calibration mode is toggled once
When multi-event files are opened, the Events menu in the menubar becomes active, and some event navigation tools become available. The title bar shows, in addition to the file name, the name of the event currently displayed (See man crystfel_geometry and man indexamajig for a description of event naming). Press 'n' to move to the next event in the file, and 'p' to move to the previous one'. Press 'e' to jump to a specific event, by providing an event name (Use the list_events program to get a list of the events included in a file). Press 'r' to jump to a random event. These actions are also accessible from the Events menu in the menubar.
This page was written by Thomas White and Valerio Mariani.
Report bugs to taw@physics.org
Copyright © 2012-2020 Deutsches Elektronen-Synchrotron DESY, a research centre of the Helmholtz Association.
Please read the AUTHORS file in the CrystFEL source code distribution for a full list of contributions and contributors.
CrystFEL is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
CrystFEL is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with CrystFEL. If not, see http://www.gnu.org/licenses/.
crystfel | pattern_sim | crystfel_geometry |
If CrystFEL is installed on your computer, you can read this manual page offline using the command man hdfsee.