CrystFEL Reference Manual
A
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B
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C
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D
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E
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F
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G
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H
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I
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J
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L
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M
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N
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P
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Q
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R
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S
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T
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U
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V
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W
API Index
A
add_refl
, function in
RefList
add_refl_to_list
, function in
RefList
assplode
, function in
Utilities
AssplodeFlag
, enum in
Utilities
asymmetric_indices
, function in
RefList utilities
B
biggest
, macro in
Utilities
bravais_lattice
, function in
Unit cell utilities
build_indexer_list
, function in
indexing
C
cell_free
, function in
UnitCell
cell_get_cartesian
, function in
UnitCell
cell_get_parameters
, function in
UnitCell
cell_get_pointgroup
, function in
UnitCell
cell_get_reciprocal
, function in
UnitCell
cell_is_sensible
, function in
Unit cell utilities
cell_new
, function in
UnitCell
cell_new_from_cell
, function in
UnitCell
cell_new_from_direct_axes
, function in
UnitCell
cell_new_from_parameters
, function in
UnitCell
cell_new_from_reciprocal_axes
, function in
UnitCell
cell_print
, function in
Unit cell utilities
cell_rotate
, function in
Unit cell utilities
cell_set_cartesian
, function in
UnitCell
cell_set_cartesian_a
, function in
UnitCell
cell_set_cartesian_b
, function in
UnitCell
cell_set_cartesian_c
, function in
UnitCell
cell_set_parameters
, function in
UnitCell
cell_set_pointgroup
, function in
UnitCell
cell_set_reciprocal
, function in
UnitCell
check_prefix
, function in
Utilities
chomp
, function in
Utilities
cleanup_gpu
, function in
simulation
cleanup_indexing
, function in
indexing
clError
, function in
simulation
copy_data
, function in
RefList
copy_geom
, function in
Detector
count_patterns
, function in
stream
C_VACUO
, macro in
Utilities
D
deg2rad
, macro in
Utilities
describe_symmetry
, function in
Symmetry
E
ELECTRON_CHARGE
, macro in
Utilities
ERROR
, macro in
Utilities
eV_to_J
, macro in
Utilities
F
fill_in_values
, function in
Detector
find_panel
, function in
Detector
find_panel_by_name
, function in
Detector
find_panel_number
, function in
Detector
find_refl
, function in
RefList
first_refl
, function in
RefList
free_detector_geometry
, function in
Detector
free_symoplist
, function in
Symmetry
free_symopmask
, function in
Symmetry
G
gaussian_noise
, function in
Utilities
get_ambiguities
, function in
Symmetry
get_asymm
, function in
Symmetry
get_cl_dev
, function in
simulation
get_detector_geometry
, function in
Detector
get_detector_pos
, function in
RefList
get_diffraction
, function in
simulation
get_diffraction_gpu
, function in
simulation
get_equiv
, function in
Symmetry
get_esd_intensity
, function in
RefList
get_excitation_error
, function in
RefList
get_indices
, function in
RefList
get_intensity
, function in
RefList
get_partial
, function in
RefList
get_partiality
, function in
RefList
get_phase
, function in
RefList
get_pixel_extents
, function in
Detector
get_pointgroup
, function in
Symmetry
get_q
, function in
Detector
get_q_for_panel
, function in
Detector
get_redundancy
, function in
RefList
get_refinable
, function in
RefList
get_scalable
, function in
RefList
get_symmetric_indices
, function in
RefList
get_temp1
, function in
RefList
get_temp2
, function in
RefList
get_tt
, function in
Detector
get_value
, function in
stream
GradientMethod
, enum in
simulation
H
hdf5_read
, function in
hdf5-file
hdf5_write
, function in
hdf5-file
hdfile
, struct in
hdf5-file
hdfile_close
, function in
hdf5-file
hdfile_get_image_binned
, function in
hdf5-file
hdfile_get_string_value
, function in
hdf5-file
hdfile_open
, function in
hdf5-file
hdfile_read_group
, function in
hdf5-file
hdfile_set_first_image
, function in
hdf5-file
hdfile_set_image
, function in
hdf5-file
I
image
, struct in
Image
ImageFeatureList
, typedef in
Image
image_add_feature
, function in
Image
image_feature_closest
, function in
Image
image_feature_count
, function in
Image
image_feature_list_free
, function in
Image
image_feature_list_new
, function in
Image
image_get_feature
, function in
Image
image_remove_feature
, function in
Image
IndexingMethod
, enum in
indexing
indexingprivate
, struct in
indexing
IndexingPrivate
, typedef in
indexing
index_pattern
, function in
indexing
is_centrosymmetric
, function in
Symmetry
is_odd
, macro in
Utilities
is_stream
, function in
stream
is_subgroup
, function in
Symmetry
J
J_to_eV
, macro in
Utilities
L
lock_reflection
, function in
RefList
M
match_cell
, function in
Unit cell utilities
match_cell_ab
, function in
Unit cell utilities
MAX_CELL_CANDIDATES
, macro in
indexing
modulus
, function in
Utilities
N
new_symopmask
, function in
Symmetry
next_found_refl
, function in
RefList
next_refl
, function in
RefList
normalise_quaternion
, function in
Quaternion
notrail
, function in
Utilities
num_equivs
, function in
Symmetry
num_reflections
, function in
RefList
P
parse_stream_flags
, function in
stream
stat_pearson_f_ignore
, function in
Statistics
stat_pearson_f_zero
, function in
Statistics
stat_pearson_i
, function in
Statistics
ph_en_to_lambda
, macro in
Utilities
ph_lambda_to_en
, macro in
Utilities
PLANCK
, macro in
Utilities
poisson_noise
, function in
Utilities
prepare_indexing
, function in
indexing
progress_bar
, function in
Utilities
Q
quaternion
, struct in
Quaternion
quaternion_modulus
, function in
Quaternion
quaternion_valid
, function in
Quaternion
quat_rot
, function in
Quaternion
R
stat_r1_i
, function in
Statistics
stat_r1_ignore
, function in
Statistics
stat_r1_zero
, function in
Statistics
stat_r2
, function in
Statistics
rad2deg
, macro in
Utilities
random_quaternion
, function in
Quaternion
stat_rdiff_ignore
, function in
Statistics
stat_rdiff_intensity
, function in
Statistics
stat_rdiff_zero
, function in
Statistics
read_chunk
, function in
stream
read_reflections
, function in
RefList utilities
read_reflections_from_file
, function in
RefList utilities
record_image
, function in
Detector
Reflection
, typedef in
RefList
reflection_free
, function in
RefList
reflection_new
, function in
RefList
RefList
, typedef in
RefList
RefListIterator
, typedef in
RefList
reflist_free
, function in
RefList
reflist_new
, function in
RefList
render_get_colour_scale
, function in
render
render_panels
, function in
render
render_scale
, function in
render
render_tiff_fp
, function in
render
render_tiff_int16
, function in
render
resolution
, function in
Unit cell utilities
res_cutoff
, function in
RefList utilities
right_handed
, function in
Unit cell utilities
rotate_cell
, function in
Unit cell utilities
run_dirax
, function in
indexing
run_mosflm
, function in
indexing
run_threads
, function in
The thread pool
S
safe_basename
, function in
Utilities
stat_scale_intensity
, function in
Statistics
setup_gpu
, function in
simulation
set_detector_pos
, function in
RefList
set_esd_intensity
, function in
RefList
set_intensity
, function in
RefList
set_partial
, function in
RefList
set_phase
, function in
RefList
set_redundancy
, function in
RefList
set_refinable
, function in
RefList
set_scalable
, function in
RefList
set_symmetric_indices
, function in
RefList
set_temp1
, function in
RefList
set_temp2
, function in
RefList
show_matrix_eqn
, function in
Utilities
simple_geometry
, function in
Detector
skip_some_files
, function in
stream
smallest
, macro in
Utilities
special_position
, function in
Symmetry
str_lattice
, function in
Unit cell utilities
symmetry_name
, function in
Symmetry
SymOpList
, typedef in
Symmetry
SymOpMask
, typedef in
Symmetry
T
tfn_combine
, function in
UnitCell
tfn_free
, function in
UnitCell
tfn_identity
, function in
UnitCell
tfn_inverse
, function in
UnitCell
tfn_print
, function in
UnitCell
tfn_vector
, function in
UnitCell
THOMSON_LENGTH
, macro in
Utilities
TPFinalFunc
, user_function in
The thread pool
TPGetTaskFunc
, user_function in
The thread pool
TPWorkFunc
, user_function in
The thread pool
tree_depth
, function in
RefList
U
uncenter_cell
, function in
Unit cell utilities
UnitCell
, typedef in
UnitCell
unlock_reflection
, function in
RefList
STATUS
, macro in
Utilities
V
validate_cell
, function in
Unit cell utilities
W
write_chunk
, function in
stream
write_reflections_to_file
, function in
RefList utilities
write_reflist
, function in
RefList utilities
write_stream_header
, function in
stream