API Index

A

add_refl, function in RefList
add_refl_to_list, function in RefList
assplode, function in Utilities
AssplodeFlag, enum in Utilities
asymmetric_indices, function in RefList utilities

B

biggest, macro in Utilities
bravais_lattice, function in Unit cell utilities
build_indexer_list, function in indexing

D

deg2rad, macro in Utilities
describe_symmetry, function in Symmetry

E

ELECTRON_CHARGE, macro in Utilities
cell_free, function in UnitCell
cell_get_cartesian, function in UnitCell
cell_get_centering, function in UnitCell
cell_get_lattice_type, function in UnitCell
cell_get_parameters, function in UnitCell
cell_get_pointgroup, function in UnitCell
cell_get_reciprocal, function in UnitCell
cell_get_unique_axis, function in UnitCell
cell_is_sensible, function in Unit cell utilities
cell_new, function in UnitCell
cell_new_from_cell, function in UnitCell
cell_new_from_direct_axes, function in UnitCell
cell_new_from_parameters, function in UnitCell
cell_new_from_reciprocal_axes, function in UnitCell
cell_print, function in Unit cell utilities
cell_rep, function in UnitCell
cell_rotate, function in Unit cell utilities
cell_set_cartesian, function in UnitCell
cell_set_cartesian_a, function in UnitCell
cell_set_cartesian_b, function in UnitCell
cell_set_cartesian_c, function in UnitCell
cell_set_centering, function in UnitCell
cell_set_lattice_type, function in UnitCell
cell_set_parameters, function in UnitCell
cell_set_pointgroup, function in UnitCell
cell_set_reciprocal, function in UnitCell
cell_set_unique_axis, function in UnitCell
cell_transform, function in UnitCell
cell_transform_inverse, function in UnitCell
ERROR, macro in Utilities
eV_to_J, macro in Utilities

F

fill_in_values, function in Detector
find_equiv_in_list, function in RefList utilities
find_panel, function in Detector
find_panel_by_name, function in Detector
find_panel_number, function in Detector
find_refl, function in RefList
first_refl, function in RefList
forbidden_reflection, function in Unit cell utilities
free_detector_geometry, function in Detector
free_symoplist, function in Symmetry
free_symopmask, function in Symmetry

G

gaussian_noise, function in Utilities
get_ambiguities, function in Symmetry
get_asymm, function in Symmetry
get_detector_geometry, function in Detector
get_detector_pos, function in RefList
get_equiv, function in Symmetry
get_esd_intensity, function in RefList
get_excitation_error, function in RefList
get_indices, function in RefList
get_intensity, function in RefList
get_partial, function in RefList
get_partiality, function in RefList
get_phase, function in RefList
get_pixel_extents, function in Detector
get_pointgroup, function in Symmetry
get_q, function in Detector
get_q_for_panel, function in Detector
get_redundancy, function in RefList
get_refinable, function in RefList
get_scalable, function in RefList
get_symmetric_indices, function in RefList
get_temp1, function in RefList
get_temp2, function in RefList
get_tt, function in Detector
get_value, function in stream

H

hdf5_read, function in hdf5-file
hdf5_write, function in hdf5-file
hdfile, struct in hdf5-file
hdfile_close, function in hdf5-file
hdfile_get_image_binned, function in hdf5-file
hdfile_get_string_value, function in hdf5-file
hdfile_open, function in hdf5-file
hdfile_read_group, function in hdf5-file
hdfile_set_first_image, function in hdf5-file
hdfile_set_image, function in hdf5-file
check_list_symmetry, function in RefList utilities
check_prefix, function in Utilities
chomp, function in Utilities

I

image, struct in Image
ImageFeatureList, typedef in Image
image_add_feature, function in Image
image_feature_closest, function in Image
image_feature_count, function in Image
image_feature_list_free, function in Image
image_feature_list_new, function in Image
image_get_feature, function in Image
image_remove_feature, function in Image
IndexingMethod, enum in indexing
IndexingPrivate, typedef in indexing
index_pattern, function in indexing
IntegerMatrix, typedef in Integer matrices
intmat_copy, function in Integer matrices
intmat_det, function in Integer matrices
intmat_equals, function in Integer matrices
intmat_free, function in Integer matrices
intmat_get, function in Integer matrices
intmat_intmat_mult, function in Integer matrices
intmat_intvec_mult, function in Integer matrices
intmat_inverse, function in Integer matrices
intmat_is_identity, function in Integer matrices
intmat_is_inversion, function in Integer matrices
intmat_new, function in Integer matrices
intmat_print, function in Integer matrices
intmat_set, function in Integer matrices
is_centrosymmetric, function in Symmetry
is_odd, macro in Utilities
is_stream, function in stream
is_subgroup, function in Symmetry

J

J_to_eV, macro in Utilities

L

largest_q, function in Detector
LatticeType, enum in UnitCell
cleanup_indexing, function in indexing
load_cell_from_pdb, function in Unit cell utilities
lock_reflection, function in RefList

M

map_all_peaks, function in indexing
match_cell, function in Unit cell utilities
match_cell_ab, function in Unit cell utilities
MAX_CELL_CANDIDATES, macro in indexing

N

new_symopmask, function in Symmetry
next_found_refl, function in RefList
next_refl, function in RefList
normalise_quaternion, function in Quaternion
notrail, function in Utilities
num_equivs, function in Symmetry
num_reflections, function in RefList

O

copy_data, function in RefList
copy_geom, function in Detector
copy_reflist, function in RefList utilities
count_patterns, function in stream

P

parse_stream_flags, function in stream
ph_en_to_lambda, macro in Utilities
ph_lambda_to_en, macro in Utilities
PLANCK, macro in Utilities
poisson_noise, function in Utilities
prepare_indexing, function in indexing
progress_bar, function in Utilities

Q

quaternion, struct in Quaternion
quaternion_modulus, function in Quaternion
quaternion_valid, function in Quaternion
quat_rot, function in Quaternion

R

rad2deg, macro in Utilities
random_quaternion, function in Quaternion
read_chunk, function in stream
read_reflections, function in RefList utilities
read_reflections_from_file, function in RefList utilities
record_image, function in Detector
Reflection, typedef in RefList
reflection_free, function in RefList
reflection_new, function in RefList
RefList, typedef in RefList
RefListIterator, typedef in RefList
reflist_free, function in RefList
reflist_new, function in RefList
render_get_colour_scale, function in render
render_panels, function in render
render_scale, function in render
render_tiff_fp, function in render
render_tiff_int16, function in render
resolution, function in Unit cell utilities
res_cutoff, function in RefList utilities
reverse_2d_mapping, function in Detector
right_handed, function in Unit cell utilities
rotate_cell, function in Unit cell utilities
run_dirax, function in indexing
run_mosflm, function in indexing
run_threads, function in The thread pool

S

safe_basename, function in Utilities
set_detector_pos, function in RefList
set_esd_intensity, function in RefList
set_intensity, function in RefList
set_partial, function in RefList
set_phase, function in RefList
set_redundancy, function in RefList
set_refinable, function in RefList
set_scalable, function in RefList
set_symmetric_indices, function in RefList
set_temp1, function in RefList
set_temp2, function in RefList
show_matrix_eqn, function in Utilities
simple_geometry, function in Detector
skip_some_files, function in stream
smallest, macro in Utilities
smallest_q, function in Detector
special_position, function in Symmetry
STATUS, macro in Utilities
stat_pearson_f_ignore, function in Statistics
stat_pearson_f_zero, function in Statistics
stat_pearson_i, function in Statistics
stat_r1_i, function in Statistics
stat_r1_ignore, function in Statistics
stat_r1_zero, function in Statistics
stat_r2, function in Statistics
stat_rdiff_ignore, function in Statistics
stat_rdiff_intensity, function in Statistics
stat_rdiff_zero, function in Statistics
stat_scale_intensity, function in Statistics
str_lattice, function in Unit cell utilities
symmetry_name, function in Symmetry
SymOpList, typedef in Symmetry
SymOpMask, typedef in Symmetry

T

tfn_combine, function in UnitCell
tfn_free, function in UnitCell
tfn_from_intmat, function in UnitCell
tfn_identity, function in UnitCell
tfn_inverse, function in UnitCell
tfn_print, function in UnitCell
tfn_vector, function in UnitCell
THOMSON_LENGTH, macro in Utilities
TPFinalFunc, user_function in The thread pool
TPGetTaskFunc, user_function in The thread pool
TPWorkFunc, user_function in The thread pool
tree_depth, function in RefList

U

uncenter_cell, function in Unit cell utilities
UnitCell, typedef in UnitCell
UnitCellTransformation, typedef in UnitCell
unlock_reflection, function in RefList

V

C_VACUO, macro in Utilities
validate_cell, function in Unit cell utilities

W

write_chunk, function in stream
write_detector_geometry, function in Detector
write_reflections_to_file, function in RefList utilities
write_reflist, function in RefList utilities
write_stream_header, function in stream